Variant report

Variant	rs193278107
Chromosome Location	chr1:175874049-175874050
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175873582..175875624-chr1:176663065..176665878,2	K562	blood:
2	chr1:175867730..175870144-chr1:175872565..175874152,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RFWD2-1	chr1:175873898-175874272	XLOC_001099

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv3344055	chr1:175873040-175887908	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175855200-175879400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:175855400-175879400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:175857200-175875800	Weak transcription	Brain Germinal Matrix	brain
4	chr1:175857600-175879400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:175858200-175879400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:175858800-175876800	Weak transcription	HSMM	muscle
7	chr1:175858800-175879400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:175858800-175879400	Weak transcription	HSMMtube	muscle
9	chr1:175859200-175879400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:175862400-175879400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:175863200-175906400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:175863400-175879400	Weak transcription	Primary T cells from cord blood	blood
13	chr1:175864800-175878000	Weak transcription	Fetal Brain Female	brain
14	chr1:175865200-175879400	Weak transcription	Fetal Lung	lung
15	chr1:175865400-175879400	Weak transcription	Fetal Stomach	stomach
16	chr1:175866600-175876200	Weak transcription	Ovary	ovary
17	chr1:175868200-175877000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:175869600-175879400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:175870000-175879400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:175870200-175879400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:175870600-175874400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:175871400-175878400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:175871400-175879600	Weak transcription	Psoas Muscle	Psoas
24	chr1:175871600-175875000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:175871800-175879400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:175871800-175879400	Weak transcription	Aorta	Aorta
27	chr1:175871800-175879400	Weak transcription	Pancreas	Pancrea
28	chr1:175872000-175876800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr1:175872800-175879400	Weak transcription	Left Ventricle	heart
30	chr1:175873200-175875000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:175873400-175875000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:175874000-175874400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr1:175874000-175879400	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links