Variant report

Variant	rs1933363
Chromosome Location	chr13:39003079-39003080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12872909	0.88[EUR][1000 genomes]
rs2323910	0.86[EUR][1000 genomes]
rs2323917	0.91[EUR][1000 genomes]
rs2323930	0.81[EUR][1000 genomes]
rs4943590	0.92[EUR][1000 genomes]
rs7329452	0.81[EUR][1000 genomes]
rs7331691	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7335374	0.81[EUR][1000 genomes]
rs7491472	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9315582	0.91[EUR][1000 genomes]
rs9532237	0.85[EUR][1000 genomes]
rs9532238	0.91[EUR][1000 genomes]
rs9548337	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9548338	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9548339	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9548364	0.86[EUR][1000 genomes]
rs9548366	0.85[EUR][1000 genomes]
rs9548368	0.86[EUR][1000 genomes]
rs9576532	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9576547	0.85[EUR][1000 genomes]
rs9576548	0.91[EUR][1000 genomes]
rs9576552	0.81[EUR][1000 genomes]
rs9594275	0.89[EUR][1000 genomes]
rs9594276	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1933363	NHLRC3	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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