Variant report

Variant	rs9576552
Chromosome Location	chr13:39080038-39080039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12872909	0.86[ASN][1000 genomes]
rs1933363	0.81[EUR][1000 genomes]
rs2323910	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2323917	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2323930	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4943590	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7331691	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7335374	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7491472	0.86[ASN][1000 genomes]
rs9315582	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9532237	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9532238	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9548338	0.86[ASN][1000 genomes]
rs9548339	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9548364	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9548366	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9548368	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9576532	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9576547	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9576548	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9594275	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9594276	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1817566	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1828009	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1799520	chr13:39057419-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv1801126	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1807030	chr13:39057419-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv1820291	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv1820460	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv1829223	chr13:39057419-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv1829423	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39079600-39093400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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