Variant report

Variant	rs1933584
Chromosome Location	chr9:84948300-84948301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10117890	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10123309	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10780541	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10867832	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10867834	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10867835	0.83[ASN][1000 genomes]
rs10867836	0.85[ASN][1000 genomes]
rs10867837	0.84[ASN][1000 genomes]
rs10867839	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10867840	0.90[ASN][1000 genomes]
rs10867844	0.93[ASN][1000 genomes]
rs11139538	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139554	0.91[ASN][1000 genomes]
rs11794308	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1200755	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1327254	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1330834	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411668	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1888327	0.96[ASN][1000 genomes]
rs1890344	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1929097	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933577	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933580	0.99[ASN][1000 genomes]
rs1933583	0.95[ASN][1000 genomes]
rs1933586	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038995	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767709	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2774634	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2774635	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2788106	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2788107	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2788109	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2788110	0.95[ASN][1000 genomes]
rs2993516	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35064221	0.93[ASN][1000 genomes]
rs3892417	0.81[CEU][hapmap]
rs4263847	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4276765	0.97[ASN][1000 genomes]
rs4338186	0.93[ASN][1000 genomes]
rs4489388	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4563967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4877229	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4877691	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57058080	0.83[ASN][1000 genomes]
rs6559656	0.81[ASN][1000 genomes]
rs6559659	0.93[ASN][1000 genomes]
rs7020546	0.93[ASN][1000 genomes]
rs7021352	0.91[ASN][1000 genomes]
rs7025964	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7027988	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7848262	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7848263	0.93[ASN][1000 genomes]
rs7848823	0.95[ASN][1000 genomes]
rs7849168	0.93[ASN][1000 genomes]
rs7852603	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7857885	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7859164	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7859493	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7861490	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9410578	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs986510	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84945800-84949800	Enhancers	NHDF-Ad	bronchial
2	chr9:84946000-84949600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:84946000-84950000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:84946200-84949600	Enhancers	NHEK	skin
5	chr9:84946400-84949400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:84946400-84949600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:84946400-84950000	Enhancers	HMEC	breast
8	chr9:84946600-84949200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:84946600-84949200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:84946600-84949200	Enhancers	HSMM	muscle
11	chr9:84946800-84948600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:84947200-84948600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr9:84947400-84948400	Enhancers	NH-A	brain
14	chr9:84947400-84949800	Enhancers	Osteobl	bone
15	chr9:84947600-84949600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:84947800-84948400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr9:84947800-84948600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:84947800-84948600	Enhancers	Fetal Muscle Leg	muscle
19	chr9:84947800-84949000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:84947800-84949400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:84947800-84949600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:84948000-84948400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:84948000-84948400	Enhancers	A549	lung
24	chr9:84948000-84949000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr9:84948200-84948400	Enhancers	Psoas Muscle	Psoas

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