Variant report

Variant	rs1933586
Chromosome Location	chr9:84946471-84946472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10117890	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10123309	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10125999	0.81[TSI][hapmap]
rs10780541	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10867832	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10867834	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10867835	0.83[ASN][1000 genomes]
rs10867836	0.85[ASN][1000 genomes]
rs10867837	0.84[ASN][1000 genomes]
rs10867839	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10867840	0.90[ASN][1000 genomes]
rs10867844	0.93[ASN][1000 genomes]
rs11139538	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139554	0.91[ASN][1000 genomes]
rs11794308	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1200754	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1200755	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1209749	0.80[EUR][1000 genomes]
rs1327254	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1330834	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411668	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1888327	0.96[ASN][1000 genomes]
rs1890344	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1929097	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933577	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933580	0.99[ASN][1000 genomes]
rs1933583	0.95[ASN][1000 genomes]
rs1933584	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038995	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767709	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767711	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2774634	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2774635	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2788106	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2788107	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2788109	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788110	0.95[ASN][1000 genomes]
rs2788114	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2788115	0.81[EUR][1000 genomes]
rs2993516	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35064221	0.93[ASN][1000 genomes]
rs3892417	0.81[CEU][hapmap]
rs4263847	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4276765	0.97[ASN][1000 genomes]
rs4338186	0.93[ASN][1000 genomes]
rs4489388	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4563967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4877229	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4877691	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57058080	0.83[ASN][1000 genomes]
rs6559656	0.81[ASN][1000 genomes]
rs6559659	0.93[ASN][1000 genomes]
rs7020546	0.93[ASN][1000 genomes]
rs7021352	0.91[ASN][1000 genomes]
rs7025964	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7027988	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7848262	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7848263	0.93[ASN][1000 genomes]
rs7848823	0.95[ASN][1000 genomes]
rs7849168	0.93[ASN][1000 genomes]
rs7852603	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7857885	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7859164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7859493	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7861490	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9410578	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs986510	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84936000-84948000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:84941800-84946600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:84942600-84946800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:84945800-84949800	Enhancers	NHDF-Ad	bronchial
5	chr9:84946000-84946600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr9:84946000-84949600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:84946000-84950000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:84946200-84946600	Enhancers	A549	lung
9	chr9:84946200-84946800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:84946200-84946800	Enhancers	NH-A	brain
11	chr9:84946200-84947000	Enhancers	Fetal Muscle Leg	muscle
12	chr9:84946200-84947200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:84946200-84948200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:84946200-84949600	Enhancers	NHEK	skin
15	chr9:84946400-84946800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr9:84946400-84946800	Enhancers	Stomach Smooth Muscle	stomach
17	chr9:84946400-84946800	Enhancers	Osteobl	bone
18	chr9:84946400-84949400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:84946400-84949600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:84946400-84950000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links