Variant report

Variant	rs10125999
Chromosome Location	chr9:85018616-85018617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr9:85018195-85018674	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000225085	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10113923	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10114756	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10123160	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10124221	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10512125	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139566	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11139569	0.82[CEU][hapmap]
rs11139570	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12002791	0.85[EUR][1000 genomes]
rs12002792	0.82[EUR][1000 genomes]
rs12551735	0.96[EUR][1000 genomes]
rs12684886	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13290374	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1411662	0.84[CEU][hapmap]
rs28520227	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2889949	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34637520	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35501117	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3892417	0.95[CEU][hapmap]
rs4877232	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4877233	0.84[CEU][hapmap]
rs4877692	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4877693	0.90[CEU][hapmap]
rs7048894	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7854052	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs7869176	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7874021	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7874946	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85018200-85020400	Enhancers	Osteobl	bone
2	chr9:85018400-85019800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:85018400-85020200	Enhancers	NHDF-Ad	bronchial

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