Variant report

Variant	rs13290374
Chromosome Location	chr9:85042539-85042540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM75B-3	chr9:85042265-85042940	NONHSAT132719

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10113923	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10114756	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10123160	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10124221	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10125999	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1041392	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10512125	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11139564	0.88[ASN][1000 genomes]
rs11139566	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11139569	0.83[ASN][1000 genomes]
rs11139570	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12002791	0.84[EUR][1000 genomes]
rs12002792	0.81[EUR][1000 genomes]
rs12350753	0.83[ASN][1000 genomes]
rs12551735	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12684844	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12684886	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13290278	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2378631	0.90[ASN][1000 genomes]
rs28520227	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2889949	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34637520	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35501117	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4465043	0.87[ASN][1000 genomes]
rs4877232	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4877692	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4877693	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7018522	0.82[ASN][1000 genomes]
rs7048894	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7048952	0.96[ASN][1000 genomes]
rs7850751	0.83[ASN][1000 genomes]
rs7865649	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7869176	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7874021	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7874946	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv982311	chr9:85041031-85052919	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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