Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10113923	0.84[EUR][1000 genomes]
rs10114756	0.83[EUR][1000 genomes]
rs10123160	0.83[EUR][1000 genomes]
rs10124221	0.81[EUR][1000 genomes]
rs10125999	0.82[EUR][1000 genomes]
rs10512125	0.82[EUR][1000 genomes]
rs11139570	0.83[EUR][1000 genomes]
rs12002791	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12551735	0.83[EUR][1000 genomes]
rs12684886	0.80[EUR][1000 genomes]
rs13290374	0.81[EUR][1000 genomes]
rs28520227	0.82[EUR][1000 genomes]
rs2889949	0.83[EUR][1000 genomes]
rs34637520	0.83[EUR][1000 genomes]
rs4877232	0.81[EUR][1000 genomes]
rs4877692	0.82[EUR][1000 genomes]
rs7048894	0.84[EUR][1000 genomes]
rs7869176	0.82[EUR][1000 genomes]
rs7874021	0.82[EUR][1000 genomes]
rs7874946	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84996800-84997600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:84997000-84997600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:84997200-84997600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:84997200-84997800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr9:84997200-84998400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:84997200-84998400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:84997400-84997800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:84997400-84998200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:84997600-84998000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:84997600-84998200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:84997600-84998200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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