Variant report

Variant	rs12551735
Chromosome Location	chr9:85037201-85037202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10113923	0.99[EUR][1000 genomes]
rs10114756	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10123160	0.99[EUR][1000 genomes]
rs10124221	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10125999	0.96[EUR][1000 genomes]
rs1041392	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10512125	0.98[EUR][1000 genomes]
rs11139564	0.86[ASN][1000 genomes]
rs11139566	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11139570	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12002791	0.86[EUR][1000 genomes]
rs12002792	0.83[EUR][1000 genomes]
rs12684844	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12684886	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13290374	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2378631	0.86[ASN][1000 genomes]
rs28520227	0.98[EUR][1000 genomes]
rs2889949	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34637520	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35501117	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4465043	0.83[ASN][1000 genomes]
rs4877232	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4877692	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4877693	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7042354	0.81[EUR][1000 genomes]
rs7048894	0.99[EUR][1000 genomes]
rs7048952	0.89[ASN][1000 genomes]
rs7865649	0.82[AMR][1000 genomes]
rs7869176	0.97[EUR][1000 genomes]
rs7874021	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7874946	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85028600-85037400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:85034800-85037400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85034800-85038400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:85035200-85037400	Weak transcription	Fetal Intestine Large	intestine
5	chr9:85036000-85038400	Enhancers	Liver	Liver
6	chr9:85036400-85037600	Enhancers	Fetal Muscle Leg	muscle
7	chr9:85036800-85039200	Weak transcription	Aorta	Aorta

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