Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:84983442..84984621-chr9:85025269..85026194,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10114756	0.90[ASN][1000 genomes]
rs10124221	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10125999	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs11139554	0.83[EUR][1000 genomes]
rs11139569	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12350753	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12551735	0.86[ASN][1000 genomes]
rs13284454	0.82[AMR][1000 genomes]
rs13290374	0.88[ASN][1000 genomes]
rs1411662	0.87[JPT][hapmap]
rs2378631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34845422	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4465043	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4478643	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4877233	0.87[JPT][hapmap]
rs4877693	0.82[CHD][hapmap];0.87[JPT][hapmap]
rs7018522	0.86[CEU][hapmap]
rs7048952	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7850751	0.81[AMR][1000 genomes]
rs7854052	0.91[JPT][hapmap]
rs7874021	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85024000-85026000	Enhancers	GM12878-XiMat	blood
2	chr9:85025000-85028400	Enhancers	HMEC	breast
3	chr9:85025200-85026200	Enhancers	Stomach Mucosa	stomach
4	chr9:85025200-85028400	Enhancers	NHEK	skin
5	chr9:85025400-85028000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:85025400-85028600	Enhancers	Fetal Intestine Large	intestine
7	chr9:85025400-85028600	Enhancers	Fetal Intestine Small	intestine
8	chr9:85025600-85026000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:85025800-85028400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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