Variant report

Variant	rs7048952
Chromosome Location	chr9:85036608-85036609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10114756	0.89[ASN][1000 genomes]
rs10124221	0.90[ASN][1000 genomes]
rs10125999	0.81[JPT][hapmap]
rs1041392	0.80[ASN][1000 genomes]
rs11139554	0.81[EUR][1000 genomes]
rs11139564	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11139569	0.95[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11139570	0.80[ASN][1000 genomes]
rs12350753	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12551735	0.89[ASN][1000 genomes]
rs12683121	0.83[AMR][1000 genomes]
rs12683715	0.83[AMR][1000 genomes]
rs12684844	0.80[ASN][1000 genomes]
rs12685162	0.82[AMR][1000 genomes]
rs13284454	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13290374	0.96[ASN][1000 genomes]
rs1411660	0.81[AMR][1000 genomes]
rs1411661	0.81[AMR][1000 genomes]
rs1411662	0.91[CHB][hapmap]
rs17085530	0.83[AMR][1000 genomes]
rs17085531	0.83[AMR][1000 genomes]
rs2026194	0.82[AMR][1000 genomes]
rs2378631	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2889949	0.91[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs34637520	0.80[ASN][1000 genomes]
rs34845422	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34867546	0.81[AMR][1000 genomes]
rs35576282	0.83[AMR][1000 genomes]
rs35677430	0.82[AMR][1000 genomes]
rs3892417	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs4465043	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4478643	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4877232	0.80[ASN][1000 genomes]
rs4877233	0.91[CHB][hapmap]
rs4877692	0.80[ASN][1000 genomes]
rs4877693	0.91[CHB][hapmap]
rs56291243	0.83[AMR][1000 genomes]
rs67968529	0.83[AMR][1000 genomes]
rs7018522	0.87[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7021813	0.83[AMR][1000 genomes]
rs7036901	0.83[AMR][1000 genomes]
rs7037151	0.83[AMR][1000 genomes]
rs7046852	0.83[AMR][1000 genomes]
rs7850751	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7854052	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7865649	0.83[ASN][1000 genomes]
rs7874021	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85028600-85037400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:85034800-85037400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85034800-85038400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:85035200-85037400	Weak transcription	Fetal Intestine Large	intestine
5	chr9:85036000-85038400	Enhancers	Liver	Liver
6	chr9:85036200-85037000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:85036400-85036800	Enhancers	Aorta	Aorta
8	chr9:85036400-85037600	Enhancers	Fetal Muscle Leg	muscle

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