Variant report

Variant	rs11139570
Chromosome Location	chr9:85053732-85053733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10113923	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10114756	0.96[EUR][1000 genomes]
rs10123160	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10124221	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10125999	1.00[CEU][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1041392	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10512125	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11139566	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11139569	0.82[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs12002791	0.86[EUR][1000 genomes]
rs12002792	0.83[EUR][1000 genomes]
rs12350753	0.95[ASN][1000 genomes]
rs12551735	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12553129	0.84[ASN][1000 genomes]
rs12683121	0.88[ASN][1000 genomes]
rs12683715	0.88[ASN][1000 genomes]
rs12684844	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12684886	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12685162	0.88[ASN][1000 genomes]
rs13290278	0.84[AMR][1000 genomes]
rs13290374	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13298628	0.91[ASN][1000 genomes]
rs13299917	0.86[ASN][1000 genomes]
rs1330817	0.85[ASN][1000 genomes]
rs1411660	0.88[ASN][1000 genomes]
rs1411661	0.81[ASN][1000 genomes]
rs1411662	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17085530	0.88[ASN][1000 genomes]
rs17085531	0.88[ASN][1000 genomes]
rs2026194	0.87[ASN][1000 genomes]
rs28520227	0.96[EUR][1000 genomes]
rs2889949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34637520	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34845422	0.91[ASN][1000 genomes]
rs34867546	0.81[ASN][1000 genomes]
rs35089927	0.93[ASN][1000 genomes]
rs35501117	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35576282	0.88[ASN][1000 genomes]
rs35677430	0.88[ASN][1000 genomes]
rs3892417	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs4478643	0.87[ASN][1000 genomes]
rs4877232	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877233	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4877692	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877693	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56291243	0.86[ASN][1000 genomes]
rs67968529	0.88[ASN][1000 genomes]
rs7018522	0.95[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7021813	0.88[ASN][1000 genomes]
rs7036901	0.88[ASN][1000 genomes]
rs7037151	0.88[ASN][1000 genomes]
rs7042354	0.84[EUR][1000 genomes]
rs7046852	0.87[ASN][1000 genomes]
rs7048894	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7048952	0.80[ASN][1000 genomes]
rs7850032	0.80[ASN][1000 genomes]
rs7850751	0.94[ASN][1000 genomes]
rs7854052	0.90[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs7865259	0.80[ASN][1000 genomes]
rs7865649	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7869176	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7874021	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7874946	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85051600-85054000	Enhancers	HMEC	breast
2	chr9:85053400-85054600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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