Variant report

Variant	rs13299917
Chromosome Location	chr9:85101374-85101375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1041392	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139569	0.81[ASN][1000 genomes]
rs11139570	0.86[ASN][1000 genomes]
rs12350753	0.81[ASN][1000 genomes]
rs12553129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12683121	0.84[ASN][1000 genomes]
rs12683715	0.84[ASN][1000 genomes]
rs12684844	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12685162	0.84[ASN][1000 genomes]
rs13298628	0.91[ASN][1000 genomes]
rs1330817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1411660	0.84[ASN][1000 genomes]
rs1411661	0.92[ASN][1000 genomes]
rs1411662	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17085530	0.84[ASN][1000 genomes]
rs17085531	0.84[ASN][1000 genomes]
rs2026194	0.84[ASN][1000 genomes]
rs2889949	0.83[ASN][1000 genomes]
rs34637520	0.86[ASN][1000 genomes]
rs34867546	0.92[ASN][1000 genomes]
rs35089927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35501117	0.82[ASN][1000 genomes]
rs35576282	0.84[ASN][1000 genomes]
rs35677430	0.84[ASN][1000 genomes]
rs4877232	0.86[ASN][1000 genomes]
rs4877233	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4877692	0.86[ASN][1000 genomes]
rs4877693	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56291243	0.83[ASN][1000 genomes]
rs67968529	0.84[ASN][1000 genomes]
rs7018522	0.81[ASN][1000 genomes]
rs7021813	0.84[ASN][1000 genomes]
rs7036901	0.84[ASN][1000 genomes]
rs7037151	0.84[ASN][1000 genomes]
rs7046852	0.84[ASN][1000 genomes]
rs7850032	0.91[ASN][1000 genomes]
rs7850751	0.83[ASN][1000 genomes]
rs7865259	0.91[ASN][1000 genomes]
rs7865649	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85098200-85103000	Weak transcription	NHEK	skin
2	chr9:85099600-85102800	Weak transcription	HepG2	liver
3	chr9:85101000-85103400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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