Variant report

Variant	rs13298628
Chromosome Location	chr9:85105862-85105863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1041392	0.92[ASN][1000 genomes]
rs11139569	0.87[ASN][1000 genomes]
rs11139570	0.91[ASN][1000 genomes]
rs12350753	0.87[ASN][1000 genomes]
rs12553129	0.89[ASN][1000 genomes]
rs12683121	0.90[ASN][1000 genomes]
rs12683715	0.90[ASN][1000 genomes]
rs12684844	0.92[ASN][1000 genomes]
rs12685162	0.90[ASN][1000 genomes]
rs13299917	0.91[ASN][1000 genomes]
rs1330817	0.89[ASN][1000 genomes]
rs1411660	0.90[ASN][1000 genomes]
rs1411661	0.83[ASN][1000 genomes]
rs1411662	0.99[ASN][1000 genomes]
rs17085530	0.90[ASN][1000 genomes]
rs17085531	0.90[ASN][1000 genomes]
rs2026194	0.91[ASN][1000 genomes]
rs2889949	0.89[ASN][1000 genomes]
rs34637520	0.91[ASN][1000 genomes]
rs34845422	0.83[ASN][1000 genomes]
rs34867546	0.83[ASN][1000 genomes]
rs35089927	0.98[ASN][1000 genomes]
rs35501117	0.86[ASN][1000 genomes]
rs35576282	0.90[ASN][1000 genomes]
rs35677430	0.90[ASN][1000 genomes]
rs4877232	0.91[ASN][1000 genomes]
rs4877233	0.99[ASN][1000 genomes]
rs4877692	0.91[ASN][1000 genomes]
rs4877693	0.92[ASN][1000 genomes]
rs56291243	0.89[ASN][1000 genomes]
rs67968529	0.90[ASN][1000 genomes]
rs7018522	0.87[ASN][1000 genomes]
rs7021813	0.90[ASN][1000 genomes]
rs7036901	0.90[ASN][1000 genomes]
rs7037151	0.90[ASN][1000 genomes]
rs7046852	0.91[ASN][1000 genomes]
rs7850032	0.83[ASN][1000 genomes]
rs7850751	0.88[ASN][1000 genomes]
rs7865259	0.83[ASN][1000 genomes]
rs7865649	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85102800-85106200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:85103000-85107000	Enhancers	Osteobl	bone
3	chr9:85103200-85106000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:85103800-85109400	Weak transcription	NHLF	lung
5	chr9:85104600-85107600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:85104600-85107800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:85104800-85106000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:85105200-85111200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:85105400-85107000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:85105600-85106800	Weak transcription	NHEK	skin
11	chr9:85105600-85111000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:85105800-85111200	Weak transcription	Adipose Nuclei	Adipose
13	chr9:85105800-85113400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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