Variant report

Variant	rs10512125
Chromosome Location	chr9:85027335-85027336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10113923	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10114756	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10123160	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10124221	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10125999	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139566	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139570	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12002791	0.85[EUR][1000 genomes]
rs12002792	0.82[EUR][1000 genomes]
rs12551735	0.98[EUR][1000 genomes]
rs12684886	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13290278	0.82[AMR][1000 genomes]
rs13290374	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1411662	0.80[CEU][hapmap]
rs28520227	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2889949	0.95[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34637520	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35501117	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3892417	0.90[CEU][hapmap]
rs4465043	0.81[AMR][1000 genomes]
rs4877232	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4877233	0.80[CEU][hapmap]
rs4877692	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4877693	0.85[CEU][hapmap];0.82[MEX][hapmap]
rs7042354	0.80[EUR][1000 genomes]
rs7048894	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7854052	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs7869176	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7874021	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7874946	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85025000-85028400	Enhancers	HMEC	breast
2	chr9:85025200-85028400	Enhancers	NHEK	skin
3	chr9:85025400-85028000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:85025400-85028600	Enhancers	Fetal Intestine Large	intestine
5	chr9:85025400-85028600	Enhancers	Fetal Intestine Small	intestine
6	chr9:85025800-85028400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:85026200-85028200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:85027000-85028200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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