Variant report

Variant	rs7854052
Chromosome Location	chr9:85044149-85044150
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10113923	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10114756	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10123160	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10124221	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10125999	0.90[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1041392	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10512125	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10867839	0.81[CEU][hapmap]
rs11139564	0.85[ASN][1000 genomes]
rs11139566	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11139569	0.81[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs11139570	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12350753	0.83[ASN][1000 genomes]
rs12551735	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12684844	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12684886	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13290278	0.81[AMR][1000 genomes]
rs13290374	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1411662	0.95[CHB][hapmap]
rs2378631	0.86[ASN][1000 genomes]
rs28520227	0.92[EUR][1000 genomes]
rs2889949	0.90[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34637520	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35501117	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3892417	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs4465043	0.83[ASN][1000 genomes]
rs4877232	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4877233	0.95[CHB][hapmap]
rs4877692	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4877693	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7018522	0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs7048894	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7048952	0.94[ASN][1000 genomes]
rs7850751	0.83[ASN][1000 genomes]
rs7865649	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7869176	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7874021	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7874946	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv982311	chr9:85041031-85052919	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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