Variant report

Variant	rs2788115
Chromosome Location	chr9:84816053-84816054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10117890	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10123309	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10780541	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10867832	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10867834	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10867835	0.85[ASN][1000 genomes]
rs10867836	0.82[ASN][1000 genomes]
rs10867837	0.81[ASN][1000 genomes]
rs10867839	0.86[CEU][hapmap];0.91[JPT][hapmap]
rs11139538	0.81[EUR][1000 genomes]
rs11794308	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1200754	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1200755	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1209749	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1327253	0.83[EUR][1000 genomes]
rs1327254	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1890344	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1933586	0.81[EUR][1000 genomes]
rs2038995	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2767709	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2767711	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767713	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2767714	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2767715	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2767716	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2767719	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2788113	0.91[ASN][1000 genomes]
rs2788114	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2788116	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2788117	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4263847	0.81[EUR][1000 genomes]
rs4442221	0.90[EUR][1000 genomes]
rs4489388	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4563967	0.90[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4877229	0.95[JPT][hapmap]
rs4877686	0.81[EUR][1000 genomes]
rs57058080	0.86[ASN][1000 genomes]
rs7025964	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7027988	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7853615	0.92[EUR][1000 genomes]
rs7853639	0.92[EUR][1000 genomes]
rs7859164	0.81[EUR][1000 genomes]
rs7859493	0.81[EUR][1000 genomes]
rs7861490	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs986510	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84812600-84821200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:84815400-84816400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:84815600-84816200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:84816000-84821200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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