Variant report

Variant	rs2788116
Chromosome Location	chr9:84788136-84788137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10780541	0.82[EUR][1000 genomes]
rs10867832	0.84[EUR][1000 genomes]
rs10867834	0.82[EUR][1000 genomes]
rs10867839	0.86[CEU][hapmap]
rs11139500	0.82[ASN][1000 genomes]
rs1200754	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1200755	0.90[EUR][1000 genomes]
rs1209749	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12338960	0.90[JPT][hapmap]
rs1327253	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1327254	0.84[EUR][1000 genomes]
rs2038995	0.84[EUR][1000 genomes]
rs2767709	0.82[EUR][1000 genomes]
rs2767711	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2767713	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2767714	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2767715	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2767716	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2767717	0.93[ASN][1000 genomes]
rs2767719	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2788114	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2788115	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2788117	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34685815	0.83[ASN][1000 genomes]
rs4442221	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4489388	0.81[EUR][1000 genomes]
rs4563967	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs4877686	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6559650	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs7025964	0.84[EUR][1000 genomes]
rs7027988	0.82[EUR][1000 genomes]
rs7853615	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7853639	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7861490	0.82[EUR][1000 genomes]
rs986510	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs995173	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84786000-84788200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:84786400-84795800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links