Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10867826	0.82[JPT][hapmap]
rs11139497	0.85[ASN][1000 genomes]
rs11139500	0.91[ASN][1000 genomes]
rs1200754	0.84[EUR][1000 genomes]
rs1209749	0.84[EUR][1000 genomes]
rs12338960	0.95[JPT][hapmap]
rs1319017	0.82[ASN][1000 genomes]
rs2767711	0.83[EUR][1000 genomes]
rs2767713	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767714	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767715	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767716	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767717	0.84[ASN][1000 genomes]
rs2767719	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2788114	0.83[EUR][1000 genomes]
rs2788115	0.83[EUR][1000 genomes]
rs2788116	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2788117	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34685815	0.92[ASN][1000 genomes]
rs4442221	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4877686	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559650	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7853615	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853639	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986510	0.82[EUR][1000 genomes]
rs995173	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84764600-84767000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:84764800-84767800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:84765600-84768000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:84766000-84767200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr9:84766200-84767800	Enhancers	NH-A	brain
6	chr9:84766600-84768200	Enhancers	NHDF-Ad	bronchial
7	chr9:84766800-84767200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:84766800-84767200	Enhancers	HSMM	muscle
9	chr9:84766800-84767200	Enhancers	NHLF	lung
10	chr9:84766800-84767400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:84766800-84767400	Enhancers	HMEC	breast
12	chr9:84766800-84767800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:84766800-84767800	Enhancers	Osteobl	bone

Quick Search: