Variant report

Variant	rs4442221
Chromosome Location	chr9:84750462-84750463
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:84746324..84748669-chr9:84750447..84752732,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10867826	0.86[JPT][hapmap]
rs10867839	0.86[CEU][hapmap]
rs11139497	0.86[ASN][1000 genomes]
rs11139500	0.91[ASN][1000 genomes]
rs1200754	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1200755	0.84[EUR][1000 genomes]
rs1209749	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12338960	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12347979	0.81[ASN][1000 genomes]
rs1319017	0.83[ASN][1000 genomes]
rs1327253	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2767711	0.90[EUR][1000 genomes]
rs2767713	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2767714	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2767715	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2767716	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2767717	0.84[ASN][1000 genomes]
rs2767719	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2788114	0.90[EUR][1000 genomes]
rs2788115	0.90[EUR][1000 genomes]
rs2788116	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2788117	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34685815	0.91[ASN][1000 genomes]
rs4563967	0.90[CEU][hapmap]
rs4877686	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6559650	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7853615	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7853639	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs986510	0.89[EUR][1000 genomes]
rs995173	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84749400-84752600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:84749400-84753600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:84749600-84753200	Weak transcription	NHDF-Ad	bronchial
4	chr9:84749600-84754800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:84750400-84750600	ZNF genes & repeats	Primary B cells from cord blood	blood

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