Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10867826	0.82[JPT][hapmap]
rs10867836	0.80[AMR][1000 genomes]
rs10867837	0.80[AMR][1000 genomes]
rs11139497	0.84[ASN][1000 genomes]
rs11139500	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12338960	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12347979	0.84[ASN][1000 genomes]
rs1319017	0.87[ASN][1000 genomes]
rs1327253	0.95[ASN][1000 genomes]
rs2767713	0.82[ASN][1000 genomes]
rs2767714	0.82[ASN][1000 genomes]
rs2767715	0.82[ASN][1000 genomes]
rs2767716	0.82[ASN][1000 genomes]
rs2767717	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2767719	0.86[ASN][1000 genomes]
rs2788113	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2788116	0.83[ASN][1000 genomes]
rs2788117	0.86[ASN][1000 genomes]
rs34685815	0.87[ASN][1000 genomes]
rs4442221	0.95[ASN][1000 genomes]
rs4877229	0.87[CEU][hapmap]
rs4877686	0.95[ASN][1000 genomes]
rs6559650	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs7853615	0.95[ASN][1000 genomes]
rs7853639	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84749600-84754800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:84753200-84754000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:84753600-84754000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search: