Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10867835	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10867836	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10867837	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10867840	0.81[EUR][1000 genomes]
rs11139500	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1327253	0.84[ASN][1000 genomes]
rs2767713	0.92[ASN][1000 genomes]
rs2767714	0.92[ASN][1000 genomes]
rs2767715	0.92[ASN][1000 genomes]
rs2767716	0.92[ASN][1000 genomes]
rs2767719	0.90[ASN][1000 genomes]
rs2788113	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2788116	0.93[ASN][1000 genomes]
rs2788117	0.90[ASN][1000 genomes]
rs4442221	0.84[ASN][1000 genomes]
rs4877229	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4877686	0.84[ASN][1000 genomes]
rs7853615	0.84[ASN][1000 genomes]
rs7853639	0.84[ASN][1000 genomes]
rs995173	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84786400-84795800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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