Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10867826	0.81[JPT][hapmap]
rs10867835	0.82[EUR][1000 genomes]
rs10867836	0.82[EUR][1000 genomes]
rs10867837	0.82[EUR][1000 genomes]
rs11139497	0.81[ASN][1000 genomes]
rs12338960	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12347979	0.81[ASN][1000 genomes]
rs1319017	0.83[ASN][1000 genomes]
rs1327253	0.91[ASN][1000 genomes]
rs2767713	0.81[ASN][1000 genomes]
rs2767714	0.81[ASN][1000 genomes]
rs2767715	0.81[ASN][1000 genomes]
rs2767716	0.81[ASN][1000 genomes]
rs2767717	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2767719	0.82[ASN][1000 genomes]
rs2788113	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2788116	0.82[ASN][1000 genomes]
rs2788117	0.82[ASN][1000 genomes]
rs34685815	0.84[ASN][1000 genomes]
rs4442221	0.91[ASN][1000 genomes]
rs4877229	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs4877686	0.91[ASN][1000 genomes]
rs6559650	0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs7853615	0.91[ASN][1000 genomes]
rs7853639	0.91[ASN][1000 genomes]
rs995173	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11139500	C9orf64	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84755800-84763800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:84762000-84763400	Enhancers	Osteobl	bone
3	chr9:84762200-84763400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:84762400-84763400	Enhancers	NHDF-Ad	bronchial
5	chr9:84762400-84764200	Enhancers	Fetal Kidney	kidney
6	chr9:84762600-84763200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:84762600-84764000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:84762600-84764600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:84762800-84763800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:84763000-84763800	Enhancers	Fetal Lung	lung
11	chr9:84763000-84764400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:84763000-84764400	Enhancers	Muscle Satellite Cultured Cells	--

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