Variant report

Variant	rs11139497
Chromosome Location	chr9:84739941-84739942
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10867826	0.85[CHB][hapmap]
rs11139500	0.81[ASN][1000 genomes]
rs12338960	0.85[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs12340419	0.80[YRI][hapmap]
rs12347979	0.91[ASN][1000 genomes]
rs1319017	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1327253	0.85[ASN][1000 genomes]
rs4442221	0.86[ASN][1000 genomes]
rs4877686	0.85[ASN][1000 genomes]
rs6559650	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7048006	0.82[ASN][1000 genomes]
rs7853615	0.85[ASN][1000 genomes]
rs7853639	0.85[ASN][1000 genomes]
rs995173	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Schizophrenia	25056061	GWAS catalog

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84732600-84743400	Weak transcription	Fetal Brain Male	brain
2	chr9:84732800-84744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:84738600-84740400	Weak transcription	Fetal Lung	lung
4	chr9:84739000-84742800	Enhancers	Primary B cells from cord blood	blood
5	chr9:84739000-84749000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:84739600-84744800	Enhancers	Primary B cells from peripheral blood	blood
7	chr9:84739800-84744600	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links