Variant report

Variant	rs7048006
Chromosome Location	chr9:84744273-84744274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11139497	0.82[ASN][1000 genomes]
rs12338960	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12347979	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1319017	0.85[ASN][1000 genomes]
rs6559650	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84732800-84744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:84739000-84749000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:84739600-84744800	Enhancers	Primary B cells from peripheral blood	blood
4	chr9:84739800-84744600	Weak transcription	Osteobl	bone
5	chr9:84742200-84744400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:84742400-84746400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr9:84743400-84745000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:84743600-84745000	Enhancers	Primary B cells from cord blood	blood
9	chr9:84744000-84748400	Weak transcription	Fetal Lung	lung
10	chr9:84744000-84749000	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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