Variant report

Variant	rs12338960
Chromosome Location	chr9:84743408-84743409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10867826	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs11139497	0.91[ASN][1000 genomes]
rs11139500	0.81[ASN][1000 genomes]
rs12347979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1319017	0.94[ASN][1000 genomes]
rs4442221	0.81[ASN][1000 genomes]
rs4877228	0.82[GIH][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs6559650	0.84[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7048006	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs995173	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84732800-84744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:84739000-84749000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:84739600-84744800	Enhancers	Primary B cells from peripheral blood	blood
4	chr9:84739800-84744600	Weak transcription	Osteobl	bone
5	chr9:84742200-84744400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:84742400-84744000	Enhancers	Fetal Lung	lung
7	chr9:84742400-84744200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr9:84742400-84746400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:84742600-84744200	Enhancers	Primary hematopoietic stem cells	blood
10	chr9:84742800-84743600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:84743000-84743600	Enhancers	Fetal Muscle Leg	muscle
12	chr9:84743000-84744000	Enhancers	Ovary	ovary
13	chr9:84743000-84744200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:84743000-84744200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:84743200-84743600	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr9:84743200-84743600	Enhancers	Left Ventricle	heart
17	chr9:84743400-84744000	Enhancers	Fetal Brain Male	brain
18	chr9:84743400-84744000	Enhancers	Fetal Brain Female	brain
19	chr9:84743400-84745000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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