Variant report

Variant	rs2767719
Chromosome Location	chr9:84789243-84789244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10780541	0.80[EUR][1000 genomes]
rs10867826	0.81[JPT][hapmap]
rs10867832	0.82[EUR][1000 genomes]
rs10867834	0.81[EUR][1000 genomes]
rs10867839	0.86[CEU][hapmap]
rs11139500	0.82[ASN][1000 genomes]
rs1200754	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1200755	0.89[EUR][1000 genomes]
rs1209749	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12338960	0.90[JPT][hapmap]
rs1327253	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1327254	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2038995	0.82[EUR][1000 genomes]
rs2767709	0.81[EUR][1000 genomes]
rs2767711	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2767713	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2767714	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2767715	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2767716	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2767717	0.90[ASN][1000 genomes]
rs2788114	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2788115	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2788116	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2788117	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34685815	0.86[ASN][1000 genomes]
rs4442221	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4489388	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4563967	0.90[CEU][hapmap];0.83[AMR][1000 genomes]
rs4877686	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6559650	0.95[JPT][hapmap]
rs7025964	0.83[EUR][1000 genomes]
rs7027988	0.80[EUR][1000 genomes]
rs7853615	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7853639	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7861490	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs986510	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs995173	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84786400-84795800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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