Variant report

Variant	rs1935037
Chromosome Location	chr1:223496729-223496730
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223306747..223308413-chr1:223494380..223496963,2	MCF-7	breast:
2	chr1:223496498..223499043-chr1:223513776..223516102,2	K562	blood:

Variant related genes	Relation type
ENSG00000187554	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1341289	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1518040	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1539047	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163787	0.80[AFR][1000 genomes]
rs17163789	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17163816	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17163818	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17487717	0.82[AFR][1000 genomes]
rs1829308	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1829309	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1850562	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1856933	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1949441	0.82[AFR][1000 genomes]
rs2096082	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2138970	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176504	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2176505	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2176506	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34238669	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34468460	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4661238	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4661239	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61838234	0.81[AFR][1000 genomes]
rs61838235	0.81[AFR][1000 genomes]
rs61838236	0.81[AFR][1000 genomes]
rs61838237	0.81[AFR][1000 genomes]
rs66531524	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66768536	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66867621	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67707169	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7536652	0.82[AFR][1000 genomes]
rs825127	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs825131	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223492200-223497000	Weak transcription	Right Atrium	heart
2	chr1:223494600-223497000	Weak transcription	Esophagus	oesophagus
3	chr1:223495200-223498400	Enhancers	Fetal Thymus	thymus
4	chr1:223495600-223498400	Enhancers	Primary T cells from cord blood	blood
5	chr1:223495600-223498400	Enhancers	Thymus	Thymus
6	chr1:223495800-223496800	Enhancers	Dnd41	blood
7	chr1:223495800-223498200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:223496000-223497200	Enhancers	Ovary	ovary
9	chr1:223496000-223498000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:223496000-223498200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr1:223496000-223498600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:223496200-223497400	Weak transcription	Fetal Heart	heart
13	chr1:223496200-223498200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr1:223496200-223498200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr1:223496400-223496800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:223496400-223497000	Weak transcription	Pancreas	Pancrea
17	chr1:223496400-223498200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr1:223496400-223498200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:223496400-223498400	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr1:223496600-223497400	Enhancers	Primary hematopoietic stem cells	blood

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