Variant report

Variant	rs825131
Chromosome Location	chr1:223518146-223518147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223518091..223519665-chr1:223535911..223537575,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143502	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1341289	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1518040	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1539047	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17163789	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17163816	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17163818	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17163824	0.85[AFR][1000 genomes]
rs1829308	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1829309	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1850562	0.87[EUR][1000 genomes]
rs1856933	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1935037	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2096082	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2138970	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2176504	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2176505	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2176506	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34238669	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34468460	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4661238	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4661239	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61838249	0.84[AFR][1000 genomes]
rs66531524	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66768536	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66867621	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67707169	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs825127	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1010798	chr1:223498145-223538989	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223505600-223521400	Weak transcription	Primary T cells from cord blood	blood
2	chr1:223506600-223526000	Weak transcription	Esophagus	oesophagus
3	chr1:223511800-223527000	Enhancers	Fetal Heart	heart
4	chr1:223514000-223526200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:223514400-223535800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:223515200-223519200	Weak transcription	Brain Anterior Caudate	brain
7	chr1:223515400-223523200	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:223515600-223523400	Weak transcription	Gastric	stomach
9	chr1:223516200-223519000	Enhancers	Pancreas	Pancrea
10	chr1:223516600-223518200	Enhancers	Right Atrium	heart
11	chr1:223516600-223519000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:223517000-223518200	Enhancers	Stomach Mucosa	stomach
13	chr1:223517200-223518400	Enhancers	Fetal Lung	lung
14	chr1:223517600-223518200	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:223517600-223518200	Enhancers	Fetal Intestine Small	intestine
16	chr1:223517600-223527400	Enhancers	Ovary	ovary
17	chr1:223518000-223518200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:223518000-223519000	Weak transcription	Right Ventricle	heart

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