Variant report

Variant	rs1936663
Chromosome Location	chr1:192348102-192348103
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10157255	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs10494671	0.92[CHB][hapmap]
rs10494672	0.85[CEU][hapmap];0.92[JPT][hapmap]
rs10801113	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10921133	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10921134	0.92[CHB][hapmap]
rs1124172	0.85[CEU][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap]
rs1175139	0.88[CEU][hapmap]
rs1175145	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs1175147	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs12074962	0.92[CHB][hapmap]
rs12076472	0.92[CHB][hapmap]
rs12087502	0.92[CHB][hapmap]
rs12087641	0.92[CHB][hapmap]
rs12124127	0.85[CEU][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap]
rs12561839	0.92[CHB][hapmap]
rs1339129	0.92[CEU][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap]
rs1339131	0.85[CEU][hapmap];0.92[JPT][hapmap]
rs1343944	0.92[CHB][hapmap]
rs1572729	0.85[CEU][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap]
rs16834183	0.92[CHB][hapmap]
rs16834191	0.92[CHB][hapmap]
rs16834199	0.92[CHB][hapmap]
rs17414071	0.92[CHB][hapmap]
rs1892145	0.92[CHB][hapmap]
rs1892146	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1892147	0.92[CHB][hapmap]
rs1936666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1936668	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4304555	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6428094	0.88[CEU][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap]
rs6428095	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs6428097	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6659110	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs6663865	0.84[CEU][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap]
rs7512102	0.92[CHB][hapmap]
rs7514892	0.92[CHB][hapmap]
rs7518835	0.92[CHB][hapmap]
rs7520486	0.92[CHB][hapmap]
rs7524601	0.91[CHB][hapmap]
rs7528947	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs7532216	0.88[CEU][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap]
rs7534108	0.82[CHB][hapmap]
rs7537683	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539984	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544311	0.85[CEU][hapmap];0.92[JPT][hapmap]
rs7554535	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs946421	0.88[CEU][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548649	chr1:192215064-192378979	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv872829	chr1:192230089-192370110	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv872830	chr1:192236376-192353005	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv548652	chr1:192249116-192353005	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv548653	chr1:192249116-192370110	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv548654	chr1:192249116-192373779	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv548655	chr1:192259645-192372674	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv548656	chr1:192283229-192372674	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv548657	chr1:192296038-192373779	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192343800-192348200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:192344800-192348400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:192345200-192348400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:192347000-192348200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:192347200-192348400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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