Variant report

Variant	rs1937405
Chromosome Location	chr10:56374941-56374942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10128484	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10509015	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10740585	0.80[AMR][1000 genomes]
rs10763116	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10825359	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10825360	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10825361	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1219783	1.00[CHB][hapmap]
rs1219784	1.00[CHB][hapmap]
rs1219785	1.00[CHB][hapmap]
rs1930150	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1930151	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1930152	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1930153	0.85[JPT][hapmap]
rs1930155	0.80[AMR][1000 genomes]
rs1930156	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs1930157	0.80[AMR][1000 genomes]
rs1930175	1.00[CHB][hapmap]
rs1937407	1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1937408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1937414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1937419	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1937420	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2104890	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2489897	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4381287	0.80[AMR][1000 genomes]
rs4520501	0.80[AMR][1000 genomes]
rs4935523	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7088162	0.90[YRI][hapmap]
rs7096402	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7099058	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7903258	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7903542	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7919479	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7919697	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7922800	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs949689	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs949690	0.80[AMR][1000 genomes]
rs951434	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9633607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9633609	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9971344	1.00[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1043144	chr10:56332903-56680265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1045621	chr10:56353504-56468425	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv550970	chr10:56361499-56764751	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56373800-56381200	Weak transcription	HUVEC	blood vessel
2	chr10:56374000-56381200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links