Variant report

Variant	rs2489897
Chromosome Location	chr10:56329192-56329193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10128484	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509015	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740585	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763116	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825359	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825360	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825361	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1219783	1.00[CHB][hapmap]
rs1219784	1.00[CHB][hapmap]
rs1219785	1.00[CHB][hapmap]
rs1930150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1930151	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1930152	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1930153	1.00[JPT][hapmap]
rs1930155	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1930156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1930157	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1930175	1.00[CHB][hapmap]
rs1937405	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes]
rs1937407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1937408	0.83[AMR][1000 genomes]
rs1937414	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1937419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1937420	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2104890	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4381287	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520501	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935523	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7076026	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096402	0.83[AMR][1000 genomes]
rs7099058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7903258	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7903542	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7919479	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7919697	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7922800	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs949689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949690	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951434	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9633607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9633609	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9971344	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895444	chr10:56254206-56354118	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv6709	chr10:56303925-56348716	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv550968	chr10:56319852-56343345	Enhancers	lncRNA	n/a	inside rSNPs	diseases
7	nsv467228	chr10:56322477-56343345	Enhancers	lncRNA	n/a	inside rSNPs	diseases
8	nsv550969	chr10:56322477-56343345	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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