Variant report

Variant	rs1937760
Chromosome Location	chr13:37666516-37666517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1199951	0.91[EUR][1000 genomes]
rs1199956	0.90[EUR][1000 genomes]
rs1199960	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199962	0.83[EUR][1000 genomes]
rs1199963	1.00[ASW][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs1199972	0.88[EUR][1000 genomes]
rs1199974	0.85[EUR][1000 genomes]
rs1199977	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199978	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199979	0.91[EUR][1000 genomes]
rs1199980	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199981	0.87[EUR][1000 genomes]
rs1199982	1.00[ASW][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs1199984	0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs1199986	0.91[EUR][1000 genomes]
rs1199987	0.91[EUR][1000 genomes]
rs1199988	0.90[EUR][1000 genomes]
rs1199989	0.90[EUR][1000 genomes]
rs12429860	0.81[EUR][1000 genomes]
rs1336755	0.90[EUR][1000 genomes]
rs1543738	0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs1764481	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1764483	0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs1764484	0.88[EUR][1000 genomes]
rs1764486	0.91[EUR][1000 genomes]
rs1764487	0.90[EUR][1000 genomes]
rs1764488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924418	0.85[EUR][1000 genomes]
rs1924422	0.81[TSI][hapmap]
rs1924426	0.87[EUR][1000 genomes]
rs2093817	0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs2147169	0.87[TSI][hapmap]
rs2211618	0.90[EUR][1000 genomes]
rs2323165	1.00[ASW][hapmap];0.87[TSI][hapmap]
rs2323392	0.81[EUR][1000 genomes]
rs2669893	0.90[EUR][1000 genomes]
rs2785620	0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs2997183	1.00[ASW][hapmap]
rs2997189	0.88[EUR][1000 genomes]
rs2997190	0.91[EUR][1000 genomes]
rs2997193	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858859	0.84[EUR][1000 genomes]
rs4291799	1.00[ASW][hapmap];0.87[TSI][hapmap]
rs4941854	1.00[ASW][hapmap];0.87[TSI][hapmap]
rs4941856	0.87[TSI][hapmap]
rs4943441	0.93[TSI][hapmap]
rs6563507	0.87[TSI][hapmap]
rs6563508	0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs6563509	0.85[EUR][1000 genomes]
rs73175079	0.82[EUR][1000 genomes]
rs7317750	0.87[TSI][hapmap]
rs7320899	0.85[EUR][1000 genomes]
rs7321129	0.81[TSI][hapmap]
rs7326688	0.90[EUR][1000 genomes]
rs7338929	0.87[TSI][hapmap]
rs7339296	0.87[EUR][1000 genomes]
rs7983986	0.87[TSI][hapmap]
rs7989205	0.87[TSI][hapmap]
rs7989380	0.90[EUR][1000 genomes]
rs7995098	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997310	0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs8001662	0.85[EUR][1000 genomes]
rs9532001	0.81[TSI][hapmap]
rs9532004	0.81[TSI][hapmap]
rs9532005	1.00[ASW][hapmap];0.87[TSI][hapmap]
rs9547707	0.81[TSI][hapmap]
rs9547715	0.87[TSI][hapmap]
rs9547718	0.87[TSI][hapmap]
rs9547721	0.87[EUR][1000 genomes]
rs9547725	0.88[EUR][1000 genomes]
rs9576162	0.90[EUR][1000 genomes]
rs9603121	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1937760	SUPT20H	cis	Whole Blood	GTEx
rs1937760	FAM48A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37660400-37666600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:37664400-37667400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr13:37665000-37668200	Active TSS	Primary B cells from cord blood	blood
4	chr13:37665200-37666600	Enhancers	Fetal Muscle Leg	muscle
5	chr13:37665400-37667400	Active TSS	Primary hematopoietic stem cells	blood
6	chr13:37665400-37678400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:37666200-37669200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr13:37666400-37666800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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