Variant report

Variant	rs7995098
Chromosome Location	chr13:37667914-37667915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1199951	0.90[EUR][1000 genomes]
rs1199956	0.88[EUR][1000 genomes]
rs1199960	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199962	0.82[EUR][1000 genomes]
rs1199963	0.88[EUR][1000 genomes]
rs1199972	0.87[EUR][1000 genomes]
rs1199974	0.84[EUR][1000 genomes]
rs1199977	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199978	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199979	0.90[EUR][1000 genomes]
rs1199980	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199981	0.86[EUR][1000 genomes]
rs1199982	0.86[EUR][1000 genomes]
rs1199984	0.87[EUR][1000 genomes]
rs1199986	0.90[EUR][1000 genomes]
rs1199987	0.90[EUR][1000 genomes]
rs1199988	0.88[EUR][1000 genomes]
rs1199989	0.88[EUR][1000 genomes]
rs1336755	0.88[EUR][1000 genomes]
rs1543738	0.83[EUR][1000 genomes]
rs1764481	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1764483	0.86[EUR][1000 genomes]
rs1764484	0.87[EUR][1000 genomes]
rs1764486	0.90[EUR][1000 genomes]
rs1764487	0.88[EUR][1000 genomes]
rs1764488	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924418	0.84[EUR][1000 genomes]
rs1924426	0.86[EUR][1000 genomes]
rs1937760	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093817	0.84[EUR][1000 genomes]
rs2211618	0.88[EUR][1000 genomes]
rs2669893	0.88[EUR][1000 genomes]
rs2785620	0.84[EUR][1000 genomes]
rs2997189	0.87[EUR][1000 genomes]
rs2997190	0.90[EUR][1000 genomes]
rs2997193	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858859	0.83[EUR][1000 genomes]
rs6563508	0.86[EUR][1000 genomes]
rs6563509	0.84[EUR][1000 genomes]
rs73175079	0.80[EUR][1000 genomes]
rs7320899	0.84[EUR][1000 genomes]
rs7326688	0.88[EUR][1000 genomes]
rs7339296	0.86[EUR][1000 genomes]
rs7989380	0.88[EUR][1000 genomes]
rs7997310	0.84[EUR][1000 genomes]
rs8001662	0.84[EUR][1000 genomes]
rs9547721	0.86[EUR][1000 genomes]
rs9547725	0.87[EUR][1000 genomes]
rs9576162	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7995098	FAM48A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37665000-37668200	Active TSS	Primary B cells from cord blood	blood
2	chr13:37665400-37678400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:37666200-37669200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr13:37666600-37668000	Weak transcription	Fetal Muscle Leg	muscle
5	chr13:37666600-37668800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr13:37667800-37669400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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