Variant report

Variant	rs1938848
Chromosome Location	chr11:101522219-101522220
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10219300	0.89[CEU][hapmap]
rs10219398	0.89[CEU][hapmap]
rs10750613	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10750614	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10750615	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10750616	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10750617	0.88[EUR][1000 genomes]
rs10895139	0.82[CEU][hapmap]
rs10895160	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10895177	0.84[EUR][1000 genomes]
rs11224830	0.89[CEU][hapmap]
rs11224875	0.89[CEU][hapmap]
rs11523959	0.89[CEU][hapmap]
rs12280648	0.89[CEU][hapmap]
rs1892873	0.87[EUR][1000 genomes]
rs1938830	0.89[EUR][1000 genomes]
rs1938840	0.82[EUR][1000 genomes]
rs1938850	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1938852	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1938853	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1938854	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1938855	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1939447	0.93[EUR][1000 genomes]
rs1939448	0.93[EUR][1000 genomes]
rs1939449	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1939451	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1939452	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2105612	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2154992	0.88[EUR][1000 genomes]
rs2154996	0.82[EUR][1000 genomes]
rs2154997	0.82[EUR][1000 genomes]
rs2186577	0.90[EUR][1000 genomes]
rs2186578	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2186579	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2226558	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2508244	0.82[EUR][1000 genomes]
rs2508246	0.81[EUR][1000 genomes]
rs2508250	0.81[EUR][1000 genomes]
rs2508251	0.82[EUR][1000 genomes]
rs2508252	0.82[EUR][1000 genomes]
rs2508254	0.82[EUR][1000 genomes]
rs2508725	0.82[EUR][1000 genomes]
rs2508726	0.82[EUR][1000 genomes]
rs2508727	0.82[EUR][1000 genomes]
rs2508728	0.82[EUR][1000 genomes]
rs2508729	0.82[EUR][1000 genomes]
rs2513191	0.82[EUR][1000 genomes]
rs3018705	0.81[EUR][1000 genomes]
rs3018706	0.81[EUR][1000 genomes]
rs3018707	0.82[EUR][1000 genomes]
rs35080821	0.80[EUR][1000 genomes]
rs4754778	0.88[CEU][hapmap]
rs4754780	0.89[CEU][hapmap]
rs6590893	0.90[EUR][1000 genomes]
rs6590894	0.87[EUR][1000 genomes]
rs6590910	0.88[EUR][1000 genomes]
rs6590911	0.85[EUR][1000 genomes]
rs7107018	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7107512	0.89[EUR][1000 genomes]
rs7112189	0.88[EUR][1000 genomes]
rs7116889	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7119712	0.89[CEU][hapmap]
rs7119886	0.83[EUR][1000 genomes]
rs7126770	0.90[EUR][1000 genomes]
rs947992	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2761704	chr11:101514325-101559016	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1938848	TMEM133	cis	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101522200-101525400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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