Variant report

Variant	rs6590910
Chromosome Location	chr11:101558075-101558076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101555926..101558823-chr11:101880932..101883184,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10219300	0.86[CEU][hapmap]
rs10219398	0.87[CEU][hapmap]
rs10750613	0.88[EUR][1000 genomes]
rs10750614	0.88[EUR][1000 genomes]
rs10750615	0.88[EUR][1000 genomes]
rs10750616	0.88[EUR][1000 genomes]
rs10750617	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10791519	0.81[AFR][1000 genomes]
rs10895160	0.80[EUR][1000 genomes]
rs10895177	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11224830	0.87[CEU][hapmap]
rs11224875	0.87[CEU][hapmap]
rs11523959	0.86[CEU][hapmap]
rs12280648	0.87[CEU][hapmap]
rs1938848	0.88[EUR][1000 genomes]
rs1938850	0.87[EUR][1000 genomes]
rs1938852	0.89[EUR][1000 genomes]
rs1938853	0.89[EUR][1000 genomes]
rs1938854	0.89[EUR][1000 genomes]
rs1938855	0.89[EUR][1000 genomes]
rs1939447	0.89[EUR][1000 genomes]
rs1939448	0.89[EUR][1000 genomes]
rs2186579	0.89[EUR][1000 genomes]
rs2226558	0.80[EUR][1000 genomes]
rs4754778	0.85[CEU][hapmap]
rs4754780	0.86[CEU][hapmap]
rs6590911	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7107018	0.80[EUR][1000 genomes]
rs7112195	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7119712	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2761704	chr11:101514325-101559016	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv461	chr11:101534107-101584004	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv468853	chr11:101539408-101616696	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv556139	chr11:101539408-101616696	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv469987	chr11:101547723-101610380	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv508653	chr11:101548861-101574051	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101556000-101563000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:101557000-101558200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:101557200-101558200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:101557200-101558200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:101557600-101558800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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