Variant report

Variant	rs1938896
Chromosome Location	chr11:102619805-102619806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11225408	0.97[ASN][1000 genomes]
rs12785526	1.00[ASN][1000 genomes]
rs12789176	0.91[ASN][1000 genomes]
rs12797980	0.95[ASN][1000 genomes]
rs12804795	0.97[ASN][1000 genomes]
rs17099492	0.97[ASN][1000 genomes]
rs17099507	0.97[ASN][1000 genomes]
rs17099512	0.97[ASN][1000 genomes]
rs17099545	0.97[ASN][1000 genomes]
rs1939006	0.95[ASN][1000 genomes]
rs1940462	0.97[ASN][1000 genomes]
rs57603637	0.97[ASN][1000 genomes]
rs73596677	0.97[ASN][1000 genomes]
rs73596694	0.96[ASN][1000 genomes]
rs7478816	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102604600-102620000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:102618400-102622800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:102618600-102622200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:102618600-102622200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:102618600-102622400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:102619000-102622000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:102619200-102620000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr11:102619200-102622400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:102619400-102620600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:102619400-102622200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:102619800-102620600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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