Variant report

Variant	rs12785526
Chromosome Location	chr11:102618340-102618341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11225408	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12787514	0.93[EUR][1000 genomes]
rs12788190	0.93[EUR][1000 genomes]
rs12789176	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12793228	0.93[EUR][1000 genomes]
rs12794384	0.84[EUR][1000 genomes]
rs12795467	0.84[EUR][1000 genomes]
rs12797980	0.95[ASN][1000 genomes]
rs12802760	0.84[EUR][1000 genomes]
rs12803000	0.84[EUR][1000 genomes]
rs12803521	0.93[EUR][1000 genomes]
rs12804795	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17099450	0.84[EUR][1000 genomes]
rs17099492	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17099507	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17099512	0.97[ASN][1000 genomes]
rs17099545	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1938896	1.00[ASN][1000 genomes]
rs1939006	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1940462	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28662184	0.81[EUR][1000 genomes]
rs33982701	0.84[EUR][1000 genomes]
rs34430514	0.84[EUR][1000 genomes]
rs34472552	0.84[EUR][1000 genomes]
rs34748528	0.93[EUR][1000 genomes]
rs34802753	0.84[EUR][1000 genomes]
rs34832307	0.84[EUR][1000 genomes]
rs34968631	0.93[EUR][1000 genomes]
rs4121361	0.93[EUR][1000 genomes]
rs57603637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71478596	0.90[EUR][1000 genomes]
rs73596677	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73596694	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7478816	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102604600-102620000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:102617600-102618400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr11:102617600-102618600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:102617600-102619200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr11:102617600-102619400	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:102617800-102618400	Active TSS	H1 Cell Line	embryonic stem cell
7	chr11:102617800-102618600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr11:102617800-102618600	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr11:102617800-102618600	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr11:102617800-102618600	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr11:102617800-102618600	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr11:102618000-102618600	Active TSS	A549	lung
13	chr11:102618200-102618600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:102618200-102619000	Active TSS	iPS-20b Cell Line	embryonic stem cell

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