Variant report

Variant	rs12788190
Chromosome Location	chr11:102618538-102618539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12785370	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12785526	0.93[EUR][1000 genomes]
rs12787514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789176	0.93[EUR][1000 genomes]
rs12793228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794384	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12795467	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12802760	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12803000	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12803521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804795	0.93[EUR][1000 genomes]
rs17099427	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17099450	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28478243	0.84[EUR][1000 genomes]
rs28662184	0.87[EUR][1000 genomes]
rs33927742	0.84[EUR][1000 genomes]
rs33982701	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34430514	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34472552	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34748528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34802753	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34832307	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34968631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866072	0.84[EUR][1000 genomes]
rs4121361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57603637	0.93[EUR][1000 genomes]
rs71478596	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102604600-102620000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:102617600-102618600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:102617600-102619200	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr11:102617600-102619400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr11:102617800-102618600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr11:102617800-102618600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr11:102617800-102618600	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr11:102617800-102618600	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr11:102617800-102618600	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr11:102618000-102618600	Active TSS	A549	lung
11	chr11:102618200-102618600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:102618200-102619000	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr11:102618400-102618600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:102618400-102622800	Weak transcription	H1 Cell Line	embryonic stem cell

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