Variant report

Variant	rs28478243
Chromosome Location	chr11:102585536-102585537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11821641	1.00[ASN][1000 genomes]
rs11828553	1.00[ASN][1000 genomes]
rs12272186	1.00[ASN][1000 genomes]
rs12289076	1.00[ASN][1000 genomes]
rs1276270	1.00[ASN][1000 genomes]
rs12785370	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787514	0.84[EUR][1000 genomes]
rs12788190	0.84[EUR][1000 genomes]
rs12793228	0.84[EUR][1000 genomes]
rs12794384	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12795467	0.93[EUR][1000 genomes]
rs12802760	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803000	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803521	0.84[EUR][1000 genomes]
rs17099394	1.00[ASN][1000 genomes]
rs17099425	1.00[ASN][1000 genomes]
rs17099427	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099450	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28662184	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33927742	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33982701	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347515	1.00[ASN][1000 genomes]
rs34430514	0.93[EUR][1000 genomes]
rs34472552	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34748528	0.84[EUR][1000 genomes]
rs34802753	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832307	0.93[EUR][1000 genomes]
rs34968631	0.84[EUR][1000 genomes]
rs35248432	1.00[ASN][1000 genomes]
rs35594127	1.00[ASN][1000 genomes]
rs35602886	1.00[ASN][1000 genomes]
rs35866072	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121361	0.84[EUR][1000 genomes]
rs57646005	1.00[ASN][1000 genomes]
rs71478596	0.87[EUR][1000 genomes]
rs73588675	1.00[ASN][1000 genomes]
rs9704711	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1506065	chr11:102585527-102585537	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102583600-102586600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr11:102583800-102586600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:102585000-102586400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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