Variant report

Variant	rs34347515
Chromosome Location	chr11:102554963-102554964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11821641	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828553	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272186	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289076	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1276270	1.00[ASN][1000 genomes]
rs12785344	0.91[AFR][1000 genomes]
rs12785370	1.00[ASN][1000 genomes]
rs12794384	1.00[ASN][1000 genomes]
rs12802760	1.00[ASN][1000 genomes]
rs12803000	1.00[ASN][1000 genomes]
rs17099394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099425	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099427	1.00[ASN][1000 genomes]
rs17099450	1.00[ASN][1000 genomes]
rs28478243	1.00[ASN][1000 genomes]
rs28662184	1.00[ASN][1000 genomes]
rs33927742	1.00[ASN][1000 genomes]
rs33982701	1.00[ASN][1000 genomes]
rs34057617	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34472552	1.00[ASN][1000 genomes]
rs34802753	1.00[ASN][1000 genomes]
rs35248432	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35594127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35602886	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866072	1.00[ASN][1000 genomes]
rs35896366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57646005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71478593	0.86[EUR][1000 genomes]
rs73588675	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9704711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102548600-102556000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:102550800-102555600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:102552600-102556200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr11:102552600-102556200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:102554400-102556000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:102554800-102555200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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