Variant report

Variant	rs34057617
Chromosome Location	chr11:102558416-102558417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11821641	0.86[EUR][1000 genomes]
rs11828553	0.86[EUR][1000 genomes]
rs12272186	0.80[EUR][1000 genomes]
rs12289076	0.86[EUR][1000 genomes]
rs17099394	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17099425	0.89[EUR][1000 genomes]
rs34347515	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35248432	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35594127	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35602886	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35896366	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57646005	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71478593	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588675	0.86[EUR][1000 genomes]
rs9704711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102556600-102558600	Enhancers	Stomach Mucosa	stomach
2	chr11:102558400-102558600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:102558400-102558800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:102558400-102560200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:102558400-102565600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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