Variant report

Variant	rs34832307
Chromosome Location	chr11:102596808-102596809
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12785370	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12785526	0.84[EUR][1000 genomes]
rs12787514	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12788190	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12789176	0.84[EUR][1000 genomes]
rs12793228	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12794384	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12795467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12802760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12803000	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12803521	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12804795	0.84[EUR][1000 genomes]
rs17099425	0.87[AFR][1000 genomes]
rs17099427	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17099450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28478243	0.93[EUR][1000 genomes]
rs28662184	0.97[EUR][1000 genomes]
rs33927742	0.93[EUR][1000 genomes]
rs33982701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34430514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34472552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34748528	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34802753	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34968631	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35866072	0.93[EUR][1000 genomes]
rs4121361	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57603637	0.84[EUR][1000 genomes]
rs71478596	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102593600-102598800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:102594600-102597600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:102594600-102598200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:102595400-102597200	Enhancers	HMEC	breast
5	chr11:102595800-102598200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:102596200-102597200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:102596400-102597200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:102596400-102601000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:102596600-102598200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:102596600-102598200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:102596600-102598200	Weak transcription	NHEK	skin
12	chr11:102596800-102598200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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