Variant report

Variant	rs4121361
Chromosome Location	chr11:102628585-102628586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:102628585-102629215	HL-60	blood:	n/a	chr11:102628743-102628756 chr11:102628785-102628798 chr11:102628745-102628754 chr11:102629054-102629063 chr11:102629051-102629064 chr11:102628787-102628796 chr11:102628784-102628797
2	SPI1	chr11:102628576-102628911	GM12891	blood:	n/a	chr11:102628743-102628756 chr11:102628785-102628798 chr11:102628745-102628754 chr11:102628787-102628796 chr11:102628784-102628797
3	SPI1	chr11:102628442-102629339	HL-60	blood:	n/a	chr11:102628743-102628756 chr11:102628785-102628798 chr11:102628745-102628754 chr11:102629054-102629063 chr11:102629051-102629064 chr11:102628787-102628796 chr11:102628784-102628797

Variant related genes	Relation type
ENSG00000225678	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12785370	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12785526	0.93[EUR][1000 genomes]
rs12787514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789176	0.93[EUR][1000 genomes]
rs12793228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794384	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12795467	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12802760	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12803000	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12803521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804795	0.93[EUR][1000 genomes]
rs17099427	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17099450	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28478243	0.84[EUR][1000 genomes]
rs28662184	0.87[EUR][1000 genomes]
rs33927742	0.84[EUR][1000 genomes]
rs33982701	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34430514	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34472552	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34748528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34802753	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34832307	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34968631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866072	0.84[EUR][1000 genomes]
rs57603637	0.93[EUR][1000 genomes]
rs71478596	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102620600-102628600	Weak transcription	HMEC	breast
2	chr11:102620600-102628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:102622800-102632400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:102623000-102632600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:102624200-102632400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:102624400-102628800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:102624600-102628600	Weak transcription	NHEK	skin
8	chr11:102624600-102632400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:102624800-102628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:102624800-102633600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:102628200-102629200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:102628200-102629200	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:102628200-102629200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:102628200-102629400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:102628200-102629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:102628200-102631400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:102628400-102628600	Enhancers	Monocytes-CD14+_RO01746	blood

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