Variant report

Variant	rs12803521
Chromosome Location	chr11:102629839-102629840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12785370	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12785526	0.93[EUR][1000 genomes]
rs12787514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789176	0.93[EUR][1000 genomes]
rs12793228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794384	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12795467	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12802760	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12803000	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12804795	0.93[EUR][1000 genomes]
rs17099427	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17099450	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28478243	0.84[EUR][1000 genomes]
rs28662184	0.87[EUR][1000 genomes]
rs33927742	0.84[EUR][1000 genomes]
rs33982701	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34430514	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34472552	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34748528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34802753	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34832307	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34968631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866072	0.84[EUR][1000 genomes]
rs4121361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57603637	0.93[EUR][1000 genomes]
rs71478596	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102622800-102632400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:102623000-102632600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:102624200-102632400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:102624600-102632400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:102624800-102633600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:102628200-102631400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:102628600-102630000	Enhancers	HMEC	breast
8	chr11:102628600-102634800	Enhancers	HUVEC	blood vessel
9	chr11:102628600-102635400	Enhancers	NHEK	skin
10	chr11:102628800-102630200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:102628800-102630200	Enhancers	Adipose Nuclei	Adipose
12	chr11:102629200-102630000	Enhancers	NHDF-Ad	bronchial
13	chr11:102629200-102630600	Weak transcription	NHLF	lung
14	chr11:102629200-102630800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:102629200-102630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:102629200-102632800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:102629400-102630800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:102629400-102630800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:102629400-102630800	Weak transcription	A549	lung
20	chr11:102629400-102642200	Weak transcription	Stomach Mucosa	stomach
21	chr11:102629600-102630200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr11:102629600-102630800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:102629600-102630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:102629600-102631000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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