Variant report

Variant	rs71478596
Chromosome Location	chr11:102604563-102604564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12785370	0.87[EUR][1000 genomes]
rs12785526	0.90[EUR][1000 genomes]
rs12787514	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12788190	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12789176	0.90[EUR][1000 genomes]
rs12793228	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12794384	0.93[EUR][1000 genomes]
rs12795467	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12802760	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12803000	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12803521	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12804795	0.90[EUR][1000 genomes]
rs17099427	0.84[EUR][1000 genomes]
rs17099450	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28478243	0.87[EUR][1000 genomes]
rs28662184	0.90[EUR][1000 genomes]
rs33927742	0.87[EUR][1000 genomes]
rs33982701	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34430514	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34472552	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34748528	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34802753	0.93[EUR][1000 genomes]
rs34832307	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34968631	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35866072	0.87[EUR][1000 genomes]
rs4121361	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57603637	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102602200-102606600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:102604400-102604600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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