Variant report

Variant	rs1939118
Chromosome Location	chr11:86509031-86509032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86381425..86386014-chr11:86508895..86515059,6	MCF-7	breast:
2	chr11:86404850..86407164-chr11:86508188..86511166,2	MCF-7	breast:
3	chr11:86411235..86420303-chr11:86507153..86518645,29	MCF-7	breast:
4	chr11:86379027..86389838-chr11:86504553..86514376,29	MCF-7	breast:
5	chr11:86414005..86419352-chr11:86508550..86514510,10	MCF-7	breast:
6	chr11:86443014..86445402-chr11:86507652..86509554,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151376	Chromatin interaction
ENSG00000254731	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10898535	1.00[ASN][1000 genomes]
rs11234804	1.00[ASN][1000 genomes]
rs11234805	1.00[ASN][1000 genomes]
rs11234806	1.00[ASN][1000 genomes]
rs11602721	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604191	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11606902	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362094	1.00[ASN][1000 genomes]
rs12786875	1.00[ASN][1000 genomes]
rs12787853	1.00[ASN][1000 genomes]
rs12788554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793595	1.00[ASN][1000 genomes]
rs12799567	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000537	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000538	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105587	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2186617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34873514	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781614	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592314	1.00[ASN][1000 genomes]
rs7128682	1.00[ASN][1000 genomes]
rs750789	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754490	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872619	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv523704	chr11:86508928-86528437	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86495400-86510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86497000-86510000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:86502400-86509800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:86502400-86510800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:86502600-86511000	Weak transcription	Fetal Kidney	kidney
6	chr11:86503400-86510400	Weak transcription	Fetal Lung	lung
7	chr11:86503600-86510600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:86503600-86510800	Weak transcription	Pancreas	Pancrea
9	chr11:86504600-86510800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:86504600-86511000	Weak transcription	Psoas Muscle	Psoas
11	chr11:86505200-86510400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:86505600-86510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:86505600-86510800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:86506800-86510800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:86507000-86510200	Enhancers	Hela-S3	cervix
16	chr11:86507200-86510000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:86507200-86510800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:86507400-86510200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:86507400-86510200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:86507400-86510200	Weak transcription	HMEC	breast
21	chr11:86507400-86510400	Weak transcription	NHEK	skin
22	chr11:86508000-86510000	Weak transcription	HUVEC	blood vessel
23	chr11:86508200-86510800	Weak transcription	Fetal Stomach	stomach
24	chr11:86508200-86510800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:86508400-86510800	Weak transcription	Fetal Heart	heart
26	chr11:86508600-86510200	Weak transcription	NHDF-Ad	bronchial
27	chr11:86508600-86511000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:86509000-86510000	Weak transcription	A549	lung
29	chr11:86509000-86510600	Weak transcription	Fetal Muscle Leg	muscle

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