Variant report
Variant | rs12362094 |
---|---|
Chromosome Location | chr11:86483432-86483433 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:6 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:86482891..86485610-chr11:86489751..86491616,2 | K562 | blood: | |
2 | chr11:86447300..86456471-chr11:86483287..86490697,27 | MCF-7 | breast: | |
3 | chr11:86472552..86476130-chr11:86481757..86485497,4 | MCF-7 | breast: | |
4 | chr11:86476625..86478672-chr11:86482969..86484752,2 | K562 | blood: | |
5 | chr11:86464300..86466562-chr11:86483037..86485838,2 | MCF-7 | breast: | |
6 | chr11:86479312..86481621-chr11:86482374..86485303,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10898535 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11234804 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11234805 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11234806 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11602721 | 1.00[ASN][1000 genomes] |
rs11606902 | 1.00[ASN][1000 genomes] |
rs12786875 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12787853 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12788554 | 1.00[ASN][1000 genomes] |
rs12793595 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12799567 | 1.00[ASN][1000 genomes] |
rs12805252 | 0.81[EUR][1000 genomes] |
rs12805405 | 1.00[ASN][1000 genomes] |
rs1939118 | 1.00[ASN][1000 genomes] |
rs2000537 | 1.00[ASN][1000 genomes] |
rs2000538 | 1.00[ASN][1000 genomes] |
rs2105587 | 1.00[ASN][1000 genomes] |
rs2186617 | 1.00[ASN][1000 genomes] |
rs34873514 | 1.00[ASN][1000 genomes] |
rs34906001 | 0.85[AFR][1000 genomes] |
rs3781614 | 1.00[ASN][1000 genomes] |
rs6592314 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7102870 | 0.94[AFR][1000 genomes] |
rs7128682 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs71465661 | 0.86[AFR][1000 genomes] |
rs744293 | 0.89[AFR][1000 genomes] |
rs750789 | 1.00[ASN][1000 genomes] |
rs754490 | 1.00[ASN][1000 genomes] |
rs7937881 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs872619 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1044081 | chr11:86133641-86868560 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
2 | nsv541118 | chr11:86133641-86868560 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
3 | nsv428263 | chr11:86357990-86508480 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv1049157 | chr11:86409059-86504155 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
5 | nsv521505 | chr11:86438115-86515072 | Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
6 | esv2756074 | chr11:86456552-86729552 | Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:86477800-86484200 | Weak transcription | Fetal Stomach | stomach |
2 | chr11:86480600-86484400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
3 | chr11:86480800-86484600 | Weak transcription | Left Ventricle | heart |
4 | chr11:86481000-86484000 | Weak transcription | Hela-S3 | cervix |