Variant report

Variant	rs7102870
Chromosome Location	chr11:86486855-86486856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86380098..86384314-chr11:86483853..86489131,7	MCF-7	breast:
2	chr11:86450780..86453510-chr11:86484513..86491302,5	MCF-7	breast:
3	chr11:86447300..86456471-chr11:86483287..86490697,27	MCF-7	breast:
4	chr11:86485881..86490658-chr11:86500006..86503115,5	MCF-7	breast:
5	chr11:86483713..86491421-chr11:86509174..86514607,12	MCF-7	breast:
6	chr11:86415971..86417723-chr11:86486189..86487721,2	MCF-7	breast:
7	chr11:86414473..86417898-chr11:86484349..86489062,8	MCF-7	breast:
8	chr11:86384691..86386910-chr11:86486642..86488921,2	MCF-7	breast:
9	chr11:86485371..86486957-chr11:86491547..86493299,2	MCF-7	breast:
10	chr11:86484180..86486892-chr11:86490481..86492650,2	MCF-7	breast:
11	chr11:86463047..86464957-chr11:86484717..86487462,2	K562	blood:
12	chr11:86480465..86482047-chr11:86485833..86487935,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151376	Chromatin interaction
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10898535	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11234804	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11234805	0.91[YRI][hapmap];0.94[AFR][1000 genomes]
rs11234806	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12362094	0.94[AFR][1000 genomes]
rs12786875	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs12787345	1.00[ASN][1000 genomes]
rs12787853	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs12793595	0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs12793673	1.00[ASN][1000 genomes]
rs12799759	1.00[ASN][1000 genomes]
rs12803572	1.00[ASN][1000 genomes]
rs12807836	1.00[ASN][1000 genomes]
rs17149343	0.81[YRI][hapmap]
rs17149373	0.92[CEU][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015747	1.00[ASN][1000 genomes]
rs34870456	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34906001	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029679	1.00[ASN][1000 genomes]
rs35322327	1.00[ASN][1000 genomes]
rs4245425	0.81[EUR][1000 genomes]
rs4363628	1.00[CEU][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943956	0.81[EUR][1000 genomes]
rs4944626	0.81[EUR][1000 genomes]
rs4944627	0.81[EUR][1000 genomes]
rs4944628	0.81[EUR][1000 genomes]
rs6592314	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs7114719	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128682	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs71465661	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744293	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929251	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86484800-86487200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:86486600-86487000	Enhancers	Hela-S3	cervix
3	chr11:86486600-86487400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:86486800-86487000	Enhancers	Colonic Mucosa	Colon
5	chr11:86486800-86487800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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