Variant report

Variant	rs744293
Chromosome Location	chr11:86492840-86492841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86487706..86491157-chr11:86492024..86495551,4	MCF-7	breast:
2	chr11:86446334..86448722-chr11:86490852..86493629,3	MCF-7	breast:
3	chr11:86485371..86486957-chr11:86491547..86493299,2	MCF-7	breast:
4	chr11:86452259..86454963-chr11:86491551..86494314,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10898535	0.92[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs11234804	0.92[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs11234805	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs11234806	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs12362094	0.89[AFR][1000 genomes]
rs12786875	0.92[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12787345	1.00[ASN][1000 genomes]
rs12787853	0.92[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12793595	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs12793673	1.00[ASN][1000 genomes]
rs12799759	1.00[ASN][1000 genomes]
rs12803572	1.00[ASN][1000 genomes]
rs12807836	1.00[ASN][1000 genomes]
rs17149343	0.92[ASW][hapmap];0.88[YRI][hapmap]
rs17149373	1.00[ASN][1000 genomes]
rs2015747	1.00[ASN][1000 genomes]
rs34870456	1.00[ASN][1000 genomes]
rs34906001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029679	1.00[ASN][1000 genomes]
rs35322327	1.00[ASN][1000 genomes]
rs4363628	1.00[ASW][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs6592314	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7102870	0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114719	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128682	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs71465661	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929251	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86487400-86501400	Weak transcription	Ovary	ovary
2	chr11:86487800-86495000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:86490200-86493800	Weak transcription	Hela-S3	cervix
4	chr11:86491800-86496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:86492000-86493800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:86492600-86495800	Enhancers	Fetal Intestine Small	intestine
7	chr11:86492800-86493000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:86492800-86495400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links